Import and assimilation

Functions for generating homogenized time series from raw data (sap flow and ancillary environmental data).

is.trex()

Testing and preparing input data

outlier()

Data cleaning and outlier detection

dt.steps()

Determine temporal resolution

gap.fill()

Gap filling by linear interpolation

Data Processing

Functions to calculate and adjust/correct sap flux densities.

tdm_dt.max()

Calculate zero-flow conditions

tdm_hw.cor()

Heartwood correction

tdm_damp()

Signal dampening correction

tdm_cal.sfd()

Calculate sap flux density

Output and analyses

Functions to generate (aggregated) output data sets and associated uncertainties.

tdm_uncertain()

Uncertainty and sensitivity analysis

agg.data()

Aggregation of time-series data

out.data()

Generating TDM output

Data sets

Functions and objects containing test (ancillary), calibration data and allometric models

sr

Solar radiation measurements (raw)

vpd

Vapor pressure deficit measurements (raw)

preci

Daily precipitation (raw)

tdm.data

Sap flow measurements

cal.data

Calibration Measurements

example.data()

Generate example TDM input data

Allometric data sets and models

Calibration data and models for 14 North-American species

allometry.data

Sapwood area and depth, and bark allometric measurements

allometry.models

Sapwood area and depth, and bark allometric models

predict_allometry()

Predict allometric parameters from DBH